WOW. I'm the wrong person to answer this, but I think you're asking too much. There has to some parameters typical to the 1st generation that a re-flash won't over ride. Just send your ECU to Guhl or if you live close, ride over there, I don't think you will regret it. I will be sending mine. Check ebay, there are a lot of cheap ECU in case you don't want to make your buddy an offer he CAN refuse.
2006 Ebony Black ZX14, Flies gone, Power Commander V, Brock's CT-Single, Brock's Street/Race Map, Schintz Racing Flash, Brisk Racing Spark Plugs, BST Wheels with World Bearing Ceramic Bearings, Scott Rotary Steering damper, Ohlins KA544 shock, FPK Ohlins kit, Brembo GP4 RX Calipers, Brembo RCS 16, Brembo RCS 19 with no Drag Half Lever, Spielger Front and Rear Brake Lines, Braketech Axis Cobra Front Rotors, Galfer Rear Wave Rotor, Shorai LFX21A6 battery, Sato Racing frame sliders, Zero Gravity Racing Screen/MRA double bubble Racing Screen, Rizoma universal lux billet grip, Rizoma Next Fluid tanks, Rizoma Swing Arm Spools, Pro-Bolt tasty Nuts, Gilles rearsets, Sargeant seat, Geelong small tank protector, Geelong Hugger, Bike master magnetic oil drain plug, vortex gas cap, cox radiator guard, Xenon HI's and Low's.